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1

Monte Carlo Null Models for Genomic Data

Ferkingstad, Egil, Holden, Lars, Sandve, Geir Kjetil

Journal:

Statistical Science

Year:

2015

Language:

english

File:

PDF, 378 KB

english, 2015

2

Ten Simple Rules for Reproducible Computational Research

Sandve, Geir Kjetil, Nekrutenko, Anton, Taylor, James, Hovig, Eivind, Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 131 KB

english, 2013

3

Galaxy Portal: interacting with the galaxy platform through mobile devices

Børnich, Claus, Grytten, Ivar, Hovig, Eivind, Paulsen, Jonas, Čech, Martin, Sandve, Geir Kjetil

Journal:

Year:

2016

Language:

english

File:

PDF, 156 KB

english, 2016

4

Identifying elemental genomic track types and representing them uniformly

Sveinung Gundersen, Matúš Kalaš, Osman Abul, Arnoldo Frigessi, Eivind Hovig, Geir Kjetil Sandve

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 430 KB

english, 2011

5

Improved benchmarks for computational motif discovery

Geir Kjetil Sandve, Osman Abul, Vegard Walseng, Finn Drabløs

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 909 KB

english, 2007

6

Assessment of composite motif discovery methods

Kjetil Klepper, Geir K Sandve, Osman Abul, Jostein Johansen, Finn Drablos

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 310 KB

english, 2008

7

Compo: composite motif discovery using discrete models

Geir Kjetil Sandve, Osman Abul, Finn Drabløs

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 359 KB

english, 2008

8

A survey of motif discovery methods in an integrated framework

Geir Kjetil Sandve, Finn Drabløs

Journal:

Year:

2006

Language:

english

File:

PDF, 395 KB

english, 2006

9

DNase hypersensitive sites and association with multiple sclerosis

Disanto, G., Kjetil Sandve, G., Ricigliano, V. A. G., Pakpoor, J., Berlanga-Taylor, A. J., Handel, A. E., Kuhle, J., Holden, L., Watson, C. T., Giovannoni, G., Handunnetthi, L., Ramagopalan, S. V.

Journal:

Human Molecular Genetics

Year:

2014

Language:

english

File:

PDF, 795 KB

english, 2014

10

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - False Discovery Rates in Identifying Functional DNA Motifs

Abul, Osman, Sandve, Geir Kjetil, Drablos, Finn

Year:

2007

Language:

english

File:

PDF, 1.27 MB

english, 2007

11

Segmentation of DNA sequences into twostate regions and melting fork regions

Tøstesen, Eivind, Sandve, Geir Kjetil, Liu, Fang, Hovig, Eivind

Journal:

Journal of Physics Condensed Matter

Year:

2009

Language:

english

File:

PDF, 622 KB

english, 2009

12

Chloroplast phylogeny of Triticum/Aegilops species is not incongruent with an ancient homoploid hybrid origin of the ancestor of the bread wheat D-genome

Sandve, Simen Rød, Marcussen, Thomas, Mayer, Klaus, Jakobsen, Kjetill S., Heier, Lise, Steuernagel, Burkhard, Wulff, Brande B. H., Olsen, Odd Arne

Journal:

New Phytologist

Year:

2015

Language:

english

File:

PDF, 269 KB

english, 2015

13

High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease

Roy, Bishnudeo, Neumann, Ralf S., Snir, Omri, Iversen, Rasmus, Sandve, Geir Kjetil, Lundin, Knut E. A., Sollid, Ludvig M.

Journal:

The Journal of Immunology

Year:

2017

Language:

english

File:

PDF, 3.76 MB

english, 2017

14

Genome build information is an essential part of genomic track files

Kanduri, Chakravarthi, Domanska, Diana, Hovig, Eivind, Sandve, Geir Kjetil

Journal:

Year:

2017

Language:

english

File:

PDF, 453 KB

english, 2017

15

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences

Khelik, Ksenia, Lagesen, Karin, Sandve, Geir Kjetil, Rognes, Torbjørn, Nederbragt, Alexander Johan

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

16

Genomic Regions Associated with Multiple Sclerosis Are Active in B Cells

Disanto, Giulio, Sandve, Geir Kjetil, Berlanga-Taylor, Antonio J., Morahan, Julia M., Dobson, Ruth, Giovannoni, Gavin, Ramagopalan, Sreeram V., Kleinschnitz, Christoph

Journal:

Year:

2012

Language:

english

File:

PDF, 231 KB

english, 2012

17

Age-Associated Hyper-Methylated Regions in the Human Brain Overlap with Bivalent Chromatin Domains

Watson, Corey T., Disanto, Giulio, Sandve, Geir Kjetil, Breden, Felix, Giovannoni, Gavin, Ramagopalan, Sreeram V., Wagner, Wolfgang

Journal:

Year:

2012

Language:

english

File:

PDF, 140 KB

english, 2012

18

ClusTrack: Feature Extraction and Similarity Measures for Clustering of Genome-Wide Data Sets

Rydbeck, Halfdan, Sandve, Geir Kjetil, Ferkingstad, Egil, Simovski, Boris, Rye, Morten, Hovig, Eivind, Torkamani, Ali

Journal:

Year:

2015

Language:

english

File:

PDF, 341 KB

english, 2015

19

c-Myb Binding Sites in Haematopoietic Chromatin Landscapes

Bengtsen, Mads, Klepper, Kjetil, Gundersen, Sveinung, Cuervo, Ignacio, Drabløs, Finn, Hovig, Eivind, Sandve, Geir Kjetil, Gabrielsen, Odd Stokke, Eskeland, Ragnhild, Huang, Chun-Hsi

Journal:

Year:

2015

Language:

english

File:

PDF, 1.26 MB

english, 2015

20

Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy

Salvatore, Stefania, Domanska, Diana, Wood, Mollie, Nordeng, Hedvig, Sandve, Geir Kjetil, Beiki, Omid

Journal:

Year:

2017

Language:

english

File:

PDF, 3.32 MB

english, 2017

21

Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments

Yao, Ying, Zia, Asima, Wyrożemski, Łukasz, Lindeman, Ida, Sandve, Geir Kjetil, Qiao, Shuo-Wang, Turner, Stephen J

Journal:

Year:

2018

Language:

english

File:

PDF, 2.81 MB

english, 2018

22

Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis

Domanska, Diana, Kanduri, Chakravarthi, Simovski, Boris, Sandve, Geir Kjetil

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 999 KB

english, 2018

23

A map of direct TF–DNA interactions in the human genome

Gheorghe, Marius, Sandve, Geir Kjetil, Khan, Aziz, Chèneby, Jeanne, Ballester, Benoit, Mathelier, Anthony

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 2.42 MB

english, 2018

24

Colocalization analyses of genomic elements: approaches, recommendations and challenges

Kanduri, Chakravarthi, Bock, Christoph, Gundersen, Sveinung, Hovig, Eivind, Sandve, Geir Kjetil, Wren, Jonathan

Journal:

Year:

2019

File:

PDF, 737 KB

2019

25

A map of direct TF–DNA interactions in the human genome

Gheorghe, Marius, Sandve, Geir Kjetil, Khan, Aziz, Chèneby, Jeanne, Ballester, Benoit, Mathelier, Anthony

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 69 KB

english, 2019

26

Transcriptional profiling of human intestinal plasma cells reveals effector functions beyond antibody production

Snir, Omri, Kanduri, Chakravarthi, Lundin, Knut E A, Sandve, Geir Kjetil, Sollid, Ludvig M

Journal:

United European Gastroenterology Journal

Year:

2019

File:

PDF, 357 KB

2019

27

NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads

Khelik, Ksenia, Sandve, Geir Kjetil, Nederbragt, Alexander Johan, Rognes, TorbjÃ¸rn

Journal:

BMC Bioinformatics

Year:

2020

Language:

english

File:

PDF, 1.19 MB

english, 2020

28

Incidence and characteristics of pancreatic injuries among trauma patients admitted to a Norwegian trauma centre: a population-based cohort study

Wiik-Larsen, Johannes, Thorsen, Kenneth, Sandve, Knut Olav, SÃ¸reide, Kjetil

Journal:

Scandinavian Journal of Gastroenterology

Year:

2020

File:

PDF, 1.17 MB

2020

29

B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2

du PrÃ©, M. Fleur, Blazevski, Jana, Dewan, Alisa E., Stamnaes, Jorunn, Kanduri, Chakravarthi, Sandve, Geir Kjetil, Johannesen, Marie K., Lindstad, Christian B., Hnida, Kathrin, Fugger, Lars, Melino, G

Journal:

Journal of Experimental Medicine

Year:

2020

File:

PDF, 2.56 MB

2020

30

T cell receptor repertoire as a potential diagnostic marker for celiac disease

Yao, Ying, Zia, Asima, Neumann, Ralf Stefan, Pavlovic, Milena, Balaban, Gabriel, Lundin, Knut E.A., Sandve, Geir Kjetil, Qiao, Shuo-Wang

Journal:

Clinical Immunology

Year:

2020

File:

PDF, 509 KB

2020